PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00015971-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 348aa    MW: 38573.4 Da    PI: 6.3535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00015971-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.2e-14162208354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  WALNUT_00015971-RA 162 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 208
                         79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-12162208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-15163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-14163215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-5172211No hitNo description
Gene3DG3DSA:3.30.70.2605.3E-4244294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MCGKKEEDQG ECSQTVHNMN IQSFQEQLFL QQQQQMQQHQ QQNSDIYGGG RGLIFPEVSP  60
ILQPWSLPPV HAFDPAHFAT NPVRDHDPFL APPPPSSFAG LFNRRPSLQF AYDGPSSDHL  120
RIISDTLGPV VQPGSAPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA  180
KLRSLLPSTT KTDKASLLAE VIQHVKELKR QTSLIAETSP VPTEVDELTV DASDEDGKFV  240
IKASLCCEDR SDLLPDLIKT LKALRLKTLK AEITTLGGRV KNVLFITGEE DSSSSGEQNQ  300
QQQQQQYCVS SIQEALKAVM EKTTGDESSS GTVKRQRTNI NILEHRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438654.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-110BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0B0N1U50.0A0A0B0N1U5_G
STRINGVIT_01s0011g02940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-82bHLH family protein